Start From DOI
Generate an agent prompt. The recommended path is Codex: it uses the repository skills, writes graph files under outputs/, rebuilds the site, and the viewer displays them without manual upload.
extract-paper-dataset-network: build the paper's basic graph from article and accession evidence.extend-paper-dataset-network: discover compatible external datasets and build the extended graph.
Use Claude only when you need a portable prompt outside this repo; its output still needs to be brought back into outputs/ for normal publication.